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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA3053Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04524; match to protein family HMM PF07793. (732 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.860
MCA3056
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01076.
 
     0.741
MCA2061
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03115; match to protein family HMM PF01476.
  
     0.681
MCA1464
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.677
moaD
Molybdopterin converting factor, subunit 1; Identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682; match to protein family HMM TIGR01687.
       0.668
moaE
Molybdopterin converting factor, subunit 2; Identified by similarity to SP:P30749; match to protein family HMM PF02391.
       0.668
MCA1779
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04279.
  
     0.646
pilZ
Type 4 fimbrial biogenesis protein PilZ; Identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238.
  
     0.646
MCA3057
Conserved hypothetical protein; Identified by similarity to SP:P76146; match to protein family HMM PF05249.
       0.645
MCA2739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.632
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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