STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA3078ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005. (314 aa)    
Predicted Functional Partners:
MCA3077
Conserved hypothetical integral membrane protein; Identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877.
 
 
 0.975
MCA3076
Conserved hypothetical protein; Identified by similarity to GP:17135441.
 
   
 0.911
MCA1562
Putative ABC transporter, permease protein; Identified by similarity to GP:14531034.
 
 
 0.886
MCA3075
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.812
MCA1563
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03670.
 
   
 0.596
MCA0557
ABC transporter, permease protein; Identified by similarity to SP:P31993; match to protein family HMM PF01061.
 
  
 0.568
MCA3079
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.557
MCA0168
ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.
  
     0.503
MCA1564
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04040.
 
     0.409
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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