STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA3085Putative batB protein; Identified by similarity to GP:4838139; match to protein family HMM PF00092. (328 aa)    
Predicted Functional Partners:
MCA3083
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03071; match to protein family HMM PF01882.
 
    0.954
MCA3084
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0173.
 
    0.953
MCA3087
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03075.
 
   
 0.931
MCA3086
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
0.797
MCA2741
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03070; match to protein family HMM PF07726.
 
    0.736
MCA3082
Hypothetical protein; Identified by Glimmer2; putative.
       0.441
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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