Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0009Unnamed protein product; Similar to protein D (gpD) of Enterobacteria phage P2. (361 aa)    
Predicted Functional Partners:
plu0010
Unnamed protein product; Similar to protein U (gpU) of Enterobacteria phage P2.
 
  
 0.992
plu0015
Unnamed protein product; Highly similar to protein FI (gpFI) of Enterobacteria phage P2.
 
 
 0.968
plu0026
Unnamed protein product; Highly similar to tail protein.
 
  
 0.964
plu0014
Unnamed protein product; Similar to protein FII (gpFII) of Enterobacteria phage P2.
 
  
 0.962
plu0011
PhageMin_Tail domain-containing protein; Unnamed protein product; Similar to protein T (gpT) of Enterobacteria phage P2.
 
  
 0.954
plu0024
GPW_gp25 domain-containing protein; Unnamed protein product; Similar to protein W (gpW) of Enterobacteria phage P2.
 
 
 0.945
plu4780
Unnamed protein product; Some some highly similarities with N terminal region of phage-related contractile tail sheath protein.
 
 
 0.941
plu0013
Unnamed protein product; Similar to protein E (gpE) of Enterobacteria phage P2.
 
    0.940
plu3432
Unnamed protein product; Highly similar to tail sheath protein.
 
 
 0.939
plu0022
Unnamed protein product; Similar to protein I (gpI) of Enterobacteria phage P2.
 
  
 0.933
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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