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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0019Unnamed protein product; Similar to tail fiber assembly protein from bacteriophage. (198 aa)    
Predicted Functional Partners:
plu0020
Collar domain-containing protein; Unnamed protein product; Similar to putative alternative tail fiber protein of bacteriophage-related plasmid and bacteriophage.
 
    0.944
plu0021
Collar domain-containing protein; Unnamed protein product; Similar to protein H (gpH) of Enterobacteria phage P2.
 
  
 0.929
plu0022
Unnamed protein product; Similar to protein I (gpI) of Enterobacteria phage P2.
  
  
 0.831
plu0023
Baseplate_J domain-containing protein; Unnamed protein product; Similar to protein J (gpJ) of Enterobacteria phage P2.
  
    0.825
plu0024
GPW_gp25 domain-containing protein; Unnamed protein product; Similar to protein W (gpW) of Enterobacteria phage P2.
  
    0.822
plu2024
Collar domain-containing protein; Unnamed protein product; Similar to tail fiber protein from lambdoid prophage.
 
    0.816
plu3326
Collar domain-containing protein; Unnamed protein product; Weakly similar to Sc/SvN protein, DNA inversion product.
 
    0.816
plu0025
Phage_base_V domain-containing protein; Unnamed protein product; Similar to protein V (gpV) of Enterobacteria phage P2.
  
    0.815
plu2303
Collar domain-containing protein; Unnamed protein product; Similar to tail fiber protein.
 
    0.815
plu1460
Collar domain-containing protein; Unnamed protein product; Some similarities with DNA inversion product, tail fiber protein homolog from lambdoid prophage.
 
    0.814
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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