Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
viaAUnnamed protein product; Similar to unknown protein YieM of Escherichia coli. (485 aa)    
Predicted Functional Partners:
ravA
ATPase RavA; Functions as an ATPase. May play a role in metal insertion (metal-chelatase) or as a chaperone; Belongs to the RavA family.
 
  
 0.974
plu4557
Unnamed protein product; Highly similar to unknown protein YtfK of Escherichia coli.
  
     0.773
plu2029
Unnamed protein product; Similar to unknown protein YecF of Escherichia coli.
  
     0.749
plu2480
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX).
  
     0.748
plu4107
Unnamed protein product; Similar to unknown protein YhhN of Escherichia coli.
  
     0.748
plu2481
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to Ail protein precursor of Yersinia (OmpX).
  
     0.746
atpI
ATP synthase protein I.
  
     0.734
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.726
zapC
Cell division protein ZapC; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.725
tus
DNA replication terminus site-binding protein (Ter protein) (Ter binding protein).
  
     0.725
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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