Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
5s5S ribosomal RNA; Unnamed protein product; Similar to unknown protein of Escherichia coli O157:H7. (100 aa)    
Predicted Functional Partners:
ISplu12A-2
Transposase, IS66 family; Unnamed protein product; Highly similar to unknown protein encoded by ISEc8.
       0.775
ogrK
Ogr protein.
      
 0.540
plu0034
Collar domain-containing protein; Unnamed protein product; Some similarities with putative alternative tail fiber protein of bacteriophage-related plasmid and bacteriophage.
      
 0.540
ngrA
4'-phosphopantetheinyl tranferase; Belongs to the P-Pant transferase superfamily.
      
 0.540
plu4175
Unnamed protein product; Some similarities with pyocin S3 immunity protein and Photorhabdus luminescens proteins.
      
 0.540
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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