Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0080DUF2063 domain-containing protein; Unnamed protein product; Similar to unknown protein. (249 aa)    
Predicted Functional Partners:
plu0081
UPF0276 protein plu0081; Unnamed protein product; Similar to unknown protein; Belongs to the UPF0276 family.
  
 0.992
plu0079
Unnamed protein product; Similar to unknown protein.
 
  
 0.980
plu0082
Unnamed protein product; Similar to unknown protein.
 
  
 0.978
plu0527
Unnamed protein product; Some similarities with unknown protein.
 
  
 0.931
plu0528
Unnamed protein product; Some similarities with unknown protein.
  
  
 0.710
plu3997
Unnamed protein product; Similar to putative membrane protein YqjF of Escherichia coli.
  
  
 0.538
plu0643
P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.
  
    0.521
plu0083
Unnamed protein product; Hypothetical gene.
       0.464
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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