Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0082Unnamed protein product; Similar to unknown protein. (97 aa)    
Predicted Functional Partners:
plu0081
UPF0276 protein plu0081; Unnamed protein product; Similar to unknown protein; Belongs to the UPF0276 family.
 
  
 0.984
plu0080
DUF2063 domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
  
 0.978
plu0079
Unnamed protein product; Similar to unknown protein.
 
  
 0.967
plu0527
Unnamed protein product; Some similarities with unknown protein.
 
  
 0.932
plu0643
P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.
  
    0.746
plu0528
Unnamed protein product; Some similarities with unknown protein.
  
  
 0.658
rpoS
RNA polymerase sigma factor (sigma-38); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
      
 0.623
plu3123
Unnamed protein product; Similar to peptide synthetase involved in antibiotic biosynthesis. Putative transmembrane protein.
      
 0.623
plu4334
Unnamed protein product; Similar to unknown protein of Photorhabdus luminescens.
      
 0.623
plu1085
Unnamed protein product; Similar to unknown protein.
  
    0.597
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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