Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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damXPutative membrane protein DamX, interferes with cell division; Non-essential cell division protein. (308 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
    0.749
atpI
ATP synthase protein I.
  
     0.744
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.719
priC
Primosomal replication factor N''.
  
     0.702
plu2166
Unnamed protein product; Similar to unknown protein YdgH precursor of Escherichia coli.
  
     0.694
plu4132
Unnamed protein product; Similar to putative lipoprotein YjeI precursor of Escherichia coli.
  
     0.691
plu4030
STAS domain-containing protein; Unnamed protein product; Similar to unknown protein YrbB of Escherichia coli.
 
     0.688
plu0289
Unnamed protein product; Similar to putative lipoprotein YidQ precursor of Escherichia coli.
  
     0.677
wzzE
Lipopolysaccharide biosynthesis protein WzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
    0.653
trpS
tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase) (TRPRS); Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.646
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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