Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu0093Unnamed protein product; Similar to putative membrane protein YrfC of Escherichia coli. (184 aa)    
Predicted Functional Partners:
plu0094
Unnamed protein product; Similar to unknown protein YrfD of Escherichia coli.
  
 
 0.987
plu0091
Secretin_N domain-containing protein; Unnamed protein product; Some similarities with protein transport protein HofQ precursor of Escherichia coli.
  
 
 0.983
plu0092
Unnamed protein product; Similar to putative membrane protein.
  
 
 0.981
mrcA
Penicillin-binding protein 1A (PBP-1a) (PBP1a) (penicillin-binding protein A) [Includes: Penicillin-insensitive transglycosylase (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (DD-transpeptidase)].
       0.667
hofC
Protein transport protein HofC.
   
 
 0.607
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
  
   
 0.592
plu1181
T2SP_E domain-containing protein; Unnamed protein product; Similar to putative protein transporter YggR of Escherichia coli.
  
  
 0.561
aroK
Shikimate kinase I (SKI); Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.559
plu3370
Unnamed protein product; Similar to phospholipase A.
  
     0.550
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
    0.546
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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