STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0102Unnamed protein product; Similar to two-component sensor kinase. (454 aa)    
Predicted Functional Partners:
plu1233
Unnamed protein product; Similar to C-terminal region of formate hydrogenlyase transcriptional activator.
 
 
 0.900
bvgS
Virulence sensor protein BvgS precursor.
 
 
0.878
arcB
Aerobic respiration control sensor protein.
 
 
0.863
plu0103
Unnamed protein product; Similar to two-component response regulator.
 
 
 0.857
barA
Sensor protein BarA.
 
 
0.784
cpmI
Similar to CarF, protein involved in resistance to carbapenem.
  
    0.695
flgD
Basal-body rod modification protein FlgD (flagellar protein for the initiation of hook assembly); Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.676
plu0104
Unnamed protein product; Similar to putative secreted protein.
 
   
 0.659
hnr
Hnr protein; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
 
 
 0.635
cpxR
Two-component response regulator.
 
 
 
 0.565
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.