Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
uspBUniversal stress protein B. (111 aa)    
Predicted Functional Partners:
tus
DNA replication terminus site-binding protein (Ter protein) (Ter binding protein).
  
     0.769
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.767
plu0305
GAPES3 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YhjK of Escherichia coli.
  
     0.760
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.757
atpI
ATP synthase protein I.
  
     0.753
plu3275
SseB_C domain-containing protein; Unnamed protein product; Some similarities with rhodanese-like protein SseB of Escherichia coli.
  
     0.738
plu4140
Unnamed protein product; Similar to putative TetR-family regulatory protein YjdC of Escherichia coli.
  
     0.738
smp
Protein Smp precursor.
  
     0.733
plu3312
Unnamed protein product; Similar to putative alpha helix protein YfhG of Escherichia coli.
  
     0.732
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
   
 0.730
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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