Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0136DUF4942 domain-containing protein; Unnamed protein product; Similar to unknown protein. (277 aa)    
Predicted Functional Partners:
plu4430
Uncharacterized protein; Truncated gene. Highly similar to the central region of transposase.
  
     0.705
plu0135
Unnamed protein product; Highly similar to unknown protein YkfI of Escherichia coli.
       0.695
plu4470
Unnamed protein product; Similar to putative integrase.
  
     0.676
plu3462
Methyltransferase; Unnamed protein product; Similar to adenine-specific modification methylase homolog (Gp52); Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.675
secM
Secretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.651
plu4690
Unnamed protein product; Similar to unknown protein YrdB of Escherichia coli.
  
     0.647
plu0097
Unnamed protein product; Similar to flagellar operon control protein UmoB of Proteus mirabilis and to hypothetical protein YrfF of Escherichia coli.
  
     0.642
plu1152
Unnamed protein product; Similar to putative integrase; Belongs to the 'phage' integrase family.
  
     0.631
plu2978
Unnamed protein product; Similar to Hcp protein.
  
     0.601
plu2916
Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage.
  
     0.595
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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