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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0137Unnamed protein product; Highly similar to unknown protein. (345 aa)    
Predicted Functional Partners:
hsdM
Type I site-specific deoxyribonuclease HsdM; Truncated gene. Similar to the central region of integrase.
 
    0.736
hsdR
Type I site-specific deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
    0.732
hsdS
Type I restriction enzyme specificity protein HsdS.
 
    0.722
plu0136
DUF4942 domain-containing protein; Unnamed protein product; Similar to unknown protein.
     
 0.574
plu0135
Unnamed protein product; Highly similar to unknown protein YkfI of Escherichia coli.
       0.505
plu1158
Unnamed protein product; Similar to unknown protein STY4592 of Salmonella enterica subsp. enterica serovar Typhi.
  
    0.469
plu0233
N6_Mtase domain-containing protein; Unnamed protein product; Similar to unknown protein and some weak similarities with deoxyribonuclease/methylase.
  
    0.464
plu1163
N6_Mtase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
    0.464
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.