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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0153Unnamed protein product; Some similarities with helicase. (619 aa)    
Predicted Functional Partners:
rpoB
RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.764
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.756
rpoZ
DNA-directed RNA polymerase omega chain (transcriptase omega chain) (RNA polymerase omega subunit); Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.754
dinG
Probable ATP-dependent helicase (DNA-damage-inducible protein G); DNA-dependent ATPase and 5'-3' DNA helicase.
   
 0.687
plu2129
Unnamed protein product; Highly similar to probable ATP-dependent helicase YoaA of Escherichia coli.
   
 0.687
plu2942
Unnamed protein product; Similar to DNA-methyltransferase; Belongs to the MT-A70-like family.
  
    0.665
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.623
plu2917
Unnamed protein product; Similar to bacteriophage protein, putative DNA or RNA helicases.
  
     0.595
plu4544
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with the N-terminal region of the repressor protein CI and with Mu transposase.
   
    0.561
plu4545
HTH Mu-type domain-containing protein; Unnamed protein product; Some similarities with repressor protein CI.
   
    0.561
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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