Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cipBCrystalline inclusion protein CipB. (100 aa)    
Predicted Functional Partners:
ngrA
4'-phosphopantetheinyl tranferase; Belongs to the P-Pant transferase superfamily.
      
 0.597
cipA
Crystalline inclusion protein CipA.
      
 0.592
dsbA
Disulfide interchange protein DsbA precursor.
      
 0.539
ISPlu10J
Transposase, IS630 family.
      
 0.539
agaV
Highly similar to PTS system, cytoplasmic, N-acetylgalactosamine-specific.
      
 0.539
dksA
DnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
      
 0.539
mprA
Transcriptional repressor mprA (EmrR protein).
      
 0.539
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
      
 0.539
gpmA
Phosphoglycerate mutase 1 (phosphoglyceromutase 1) (PGAM 1); Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
      
 0.539
macA
Macrolide-specific efflux protein MacA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.539
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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