STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0159FA_desaturase domain-containing protein; Unnamed protein product; Some similarities with unknown protein. (336 aa)    
Predicted Functional Partners:
plu0158
Unnamed protein product; Similar to L-arginine:lysine amidinotransferase and similar to L-arginine:glycine amidinotransferase.
 
     0.827
plu3001
Uncharacterized protein; Truncated gene. Some similarities with unknown protein YnfI precursor of Escherichia coli.
  
     0.707
plu0735
Unnamed protein product; Similar to unknown protein.
  
     0.672
plu0736
Unnamed protein product; Weakly similar to hypothetical proteins.
  
     0.663
plu0737
Unnamed protein product; Similar to unknown protein.
  
     0.659
plu0734
Unnamed protein product; Similar to unknown protein.
  
     0.657
plu0732
Unnamed protein product; Similar to unknown protein.
  
     0.652
plu3528
TauD domain-containing protein; Unnamed protein product; Some similarities with putative oxygenase and clavaminate synthase 1.
  
     0.638
plu4187
Unnamed protein product; Some similarities with cyclase/dehydrase/aromatase.
 
     0.630
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
 0.604
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.