STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uxuRUxu operon transcriptional regulator. (247 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase (D-mannonate hydrolase); Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
   
 0.814
plu0172
Unnamed protein product; Similar to dicarboxylate-binding periplasmic protein and to unknown protein YiaO of Escherichia coli.
 
     0.721
plu0173
Unnamed protein product; Similar to dicarboxylate transport system (permease small protein) and to unknown protein YiaM of Escherichia coli.
 
     0.620
uxuB
D-mannonate oxidoreductase (fructuronate reductase); Belongs to the mannitol dehydrogenase family.
 
   
 0.563
plu0174
DctM domain-containing protein; Unnamed protein product; Similar to dicarboxylate transport system (permease large protein) and to unknown protein YiaN of Escherichia coli.
 
     0.554
nadR
Transcriptional regulator NadR.
   
    0.527
plu4300
HTH gntR-type domain-containing protein; Unnamed protein product; Similar to GntR-family transcriptional regulator.
 
  
 0.429
iclR
Acetate operon repressor.
  
  
 0.418
hutC
Histidine utilization repressor protein.
  
  
 0.417
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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