STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpmCCpmC protein involved in carbapenem biosynthesis. (273 aa)    
Predicted Functional Partners:
cpmD
CpmD protein involved in carbapenem biosynthesis.
  
  0.953
cpmB
CpmB protein involved in carbapenem biosynthesis.
   
  0.950
cpmA
CpmA protein involved in carbapenem biosynthesis.
 
 
  0.914
cpmE
CpmE protein involved in carbapenem biosynthesis.
   
 
  0.901
plu2193
TauD domain-containing protein; Unnamed protein product; Weakly similar to hypothetical gamma-butyrobetaine,2-oxoglutarate.
  
     0.500
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
  
  
 0.478
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
  
  
 0.462
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.