Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cpmDCpmD protein involved in carbapenem biosynthesis. (394 aa)    
Predicted Functional Partners:
cpmC
CpmC protein involved in carbapenem biosynthesis.
  
  0.953
cpmA
CpmA protein involved in carbapenem biosynthesis.
     
 0.902
cpmE
CpmE protein involved in carbapenem biosynthesis.
    
 0.901
cpmB
CpmB protein involved in carbapenem biosynthesis.
     
  0.900
plu3526
JmjC domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.533
plu4144
JmjC domain-containing protein; Unnamed protein product; Some similarities with unknown eucaryotic protein.
  
     0.485
acpH
Acyl carrier protein phosphodiesterase; Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Belongs to the AcpH family.
  
     0.481
putP
Sodium/proline symporter (Proline permease); Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.440
cpmF
CpmF protein involved in carbapenem resistance.
  
    0.433
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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