Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
plu0199Pribosyltran domain-containing protein; Unnamed protein product; Similar to unknown protein YhgH of Escherichia coli. (227 aa)    
Predicted Functional Partners:
plu4686
MCM domain-containing protein; Unnamed protein product; Highly similar to unknown protein YifB of Escherichia coli (putative magnesium chelatase family protein).
 
  
 0.879
smf
Smf protein.
 
 
 0.833
plu1629
Lactamase_B domain-containing protein; Unnamed protein product; Similar to probable membrane protein YcaI of Escherichia coli.
 
  
 0.785
nfuA
Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
       0.708
plu4003
UPF0102 protein plu4003; Unnamed protein product; Similar to unknown protein YraN of Escherichia coli; Belongs to the UPF0102 family.
 
    0.668
nagA
N-acetylglucosamine-6-phosphate deacetylase (GLCNAC 6-P deacetylase).
  
    0.540
plu4453
Unnamed protein product; Similar to a putative DNA processing protein.
  
 
 0.538
flgC
Flagellar basal-body rod protein FlgC (Putative proximal rod protein); Belongs to the flagella basal body rod proteins family.
   
   0.535
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.532
plu0133
MPN domain-containing protein; Unnamed protein product; Highly similar putative radC-like protein YkfG of Escherichia coli; Belongs to the UPF0758 family.
 
    0.531
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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