Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0203Unnamed protein product; Some similarities with putative transport protein. (103 aa)    
Predicted Functional Partners:
plu2936
YqaJ domain-containing protein; Unnamed protein product; Similar to bacteriophage exonuclease.
  
     0.749
plu2935
Unnamed protein product; Some similarities with bacteriophage recombination protein.
  
     0.728
plu0202
Unnamed protein product; Some weak similarities with putative methyltransferase.
       0.570
plu1882
Sugarporin_N domain-containing protein; Unnamed protein product; Similar to putative glycoporin. Putative secreted protein.
  
     0.565
plu3506
Unnamed protein product; Similar to ccm gene codes for both Ccm1 and Ccm2 proteins of Proteus mirabilis.
  
     0.505
plu4280
Unnamed protein product; Similar to Rhs-family protein.
  
     0.471
plu1409
Unnamed protein product; Similar to probable MFS transporter.
  
     0.455
plu2686
Unnamed protein product; Similar to unknown protein YebY precursor of Escherichia coli.
  
     0.454
plu3011
Sulfatase domain-containing protein; Unnamed protein product; Similar to probable membrane protein YbiP of Escherichia coli.
  
     0.449
malT
Positive regulator of mal regulon; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.443
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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