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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0205Unnamed protein product; Similar to protein gp49 from prophage N15. (110 aa)    
Predicted Functional Partners:
plu0283
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to gp48 proteins of Bacteriophage N15.
 
 
 0.840
plu2846
HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with protein gp48 from phage N15.
 
     0.778
plu4513
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein of Photorhabdus.
 
     0.778
plu4365
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to bacteriophage protein.
  
     0.772
plu0206
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to protein gp48 from prophage N15.
  
     0.771
plu0900
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to protein gp48 from phage N15.
  
     0.771
plu4778
Unnamed protein product; Some similarities with protein Gp49 of Bacteriophage N15.
  
     0.771
plu0443
HTH cro/C1-type domain-containing protein; Unnamed protein product; Some similarities with a protein from bacteriophage and putative transcriptional regulator.
 
     0.767
bioH
Biotin biosynthesis protein BioH; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
       0.559
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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