STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tRNA-ProtRNA-Pro; tRNAscan-SE vs 1.3 result - Cove score = 92.73; Belongs to the cytochrome P450 family. (407 aa)    
Predicted Functional Partners:
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
 0.972
plu1880
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
 0.941
plu2642
Carrier domain-containing protein; Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 0.931
plu3532
Unnamed protein product; Similar to proteins involved in antibiotics biosynthesis (NosC, tyrocidine synthetase III, gramicidin S synthetase II...).
 
 0.918
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
 
 
 0.878
plu2670
Unnamed protein product; Similar to proteins involved in antibiotic biosynthesis (tyrocidin, gramicidin, surfactin, pyoverdine). Putative transmembrane protein.
 
 
 0.874
plu0297
Cyclo(L-leucyl-L-leucyl) synthase; It uses activated amino acids in the form of aminoacyl-tRNAs (aa-tRNAs) as substrates to catalyze the ATP-independent formation of cyclodipeptides which are intermediates in diketopiperazine (DKP) biosynthetic pathways. Catalyzes the formation of cyclo(L-Leu-L-Leu) (cLL) from L-leucyl-tRNA(Leu). Can incorporate various nonpolar residues, such as L-phenylalanine, L-leucine and L-methionine, into cyclodipeptides; Belongs to the CDPS family.
 
 
 0.853
plu1878
Carrier domain-containing protein; Unnamed protein product; Similar to antibiotic synthetase.
 
 0.849
plu3123
Unnamed protein product; Similar to peptide synthetase involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
 0.842
plu3263
Unnamed protein product; Highly similar to proteins involved in antibiotic biosynthesis. Putative transmembrane protein.
 
 
 0.842
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.