Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dppAPeriplasmic dipeptide transport protein precursor DppA. (535 aa)    
Predicted Functional Partners:
dppB
Dipeptide transport system permease protein DppB.
 0.992
dppC
Dipeptide transport system permease protein DppC.
 
 0.992
dppD
Dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
 
 0.977
dppF
Dipeptide transport ATP-binding protein dppF; Belongs to the ABC transporter superfamily.
 
 0.976
plu1854
Unnamed protein product; Similar to methyl-accepting chemotaxis protein I (MCP-I) (Serine chemoreceptor protein).
     
 0.902
sapC
Peptide transport system permease protein SapC.
 
  
 0.825
oppB
Oligopeptide transport system permease protein OppB.
 
 0.816
sapB
Peptide transport system permease protein SapB.
 
   
 0.799
oppC
Oligopeptide transport system permease protein OppC.
 
 
 0.765
hmuR
Hemin receptor precursor.
  
   
 0.677
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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