Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
dppDDipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
dppC
Dipeptide transport system permease protein DppC.
 0.999
dppB
Dipeptide transport system permease protein DppB.
 
 0.998
oppC
Oligopeptide transport system permease protein OppC.
 
 0.991
dppF
Dipeptide transport ATP-binding protein dppF; Belongs to the ABC transporter superfamily.
 
 
0.986
dppA
Periplasmic dipeptide transport protein precursor DppA.
 
 0.977
oppB
Oligopeptide transport system permease protein OppB.
 
 
 0.949
sapC
Peptide transport system permease protein SapC.
     0.892
ftsE
Cell division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
    
0.819
sapA
Peptide transport periplasmic protein SapA precursor.
 
 
 0.792
sapB
Peptide transport system permease protein SapB.
  
     0.772
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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