Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0308Unnamed protein product; Highly similar to putative membrane protein YhjD of Escherichia coli. (330 aa)    
Predicted Functional Partners:
plu2146
DctA-YdbH domain-containing protein; Unnamed protein product; Similar to membrane protein YdbH of Escherichia coli.
 
     0.714
secM
Secretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.667
plu4502
DUF1471 domain-containing protein; Unnamed protein product; Similar to unknown protein YbiJ precursor of Escherichia coli.
  
     0.665
plu4106
Unnamed protein product; Similar to unknown protein YhhL of Escherichia coli.
  
     0.664
plu0307
Tautomerase; Unnamed protein product; Highly similar to putative 4-oxalocrotonate tautomerase.
       0.659
plu2677
Unnamed protein product; Similar to probable membrane protein YniB of Escherichia coli.
  
     0.638
plu2686
Unnamed protein product; Similar to unknown protein YebY precursor of Escherichia coli.
  
     0.624
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.612
plu2087
Unnamed protein product; Similar to putative oxidoreductase component YcdY of Escherichia coli.
  
     0.588
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.586
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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