Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pmt2Pmt2 protein; Highly similar to IcmF toxin. Putative transmembrane protein. (1181 aa)    
Predicted Functional Partners:
plu0337
Unnamed protein product; Some similarities with unknown protein.
  
 0.952
plu0335
ImpA_N domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
    0.859
plu0364
DotU domain-containing protein; Unnamed protein product; Highly similar to unknown protein.
 
 
 0.822
plu0371
Unnamed protein product; Highly similar to unknown protein.
 
  
 0.817
plu0372
Unnamed protein product; Highly similar to unknown protein.
 
  
 0.810
plu0360
ImpA_N domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
 0.805
plu0367
Unnamed protein product; Similar to unknown protein.
 
  
 0.805
plu0365
Unnamed protein product; Highly similar to unknown protein.
 
  
 0.802
plu0366
Unnamed protein product; Similar to unknown protein.
 
  
 0.798
plu4600
Unnamed protein product; Similar to unknown protein.
 
  
 0.795
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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