plu0353 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu0353

Unnamed protein product; Some similarities with putative Rhs protein. (1471 aa)

Predicted Functional Partners:

plu0354

0.938

plu0352

0.912

plu0355

0.898

trxA

0.581

plu3514

0.543

plu3820

0.543

fusA

0.540

lysC

0.540

rpmE

0.539

rpmE-2

0.539

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fusA	lysC	plu0431	plu4380	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	0.625
fusA	plu0352	plu0431	plu0352	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	Unnamed protein product; Hypothetical gene.	0.540
fusA	plu0353	plu0431	plu0353	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	Unnamed protein product; Some similarities with putative Rhs protein.	0.540
fusA	plu0354	plu0431	plu0354	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	Unnamed protein product; Similar to unknown protein.	0.540
fusA	rpmE	plu0431	plu0036	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	50S ribosomal protein L31.	0.864
fusA	rpmE-2	plu0431	plu4758	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	50S ribosomal protein L31; Binds the 23S rRNA.	0.946
fusA	trxA	plu0431	plu4664	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	Thioredoxin 1 (TRX1) (TRX); Belongs to the thioredoxin family.	0.416
lysC	fusA	plu4380	plu0431	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	0.625
lysC	plu0352	plu4380	plu0352	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	Unnamed protein product; Hypothetical gene.	0.540
lysC	plu0353	plu4380	plu0353	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	Unnamed protein product; Some similarities with putative Rhs protein.	0.540
lysC	plu0354	plu4380	plu0354	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	Unnamed protein product; Similar to unknown protein.	0.540
lysC	rpmE	plu4380	plu0036	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	50S ribosomal protein L31.	0.540
lysC	rpmE-2	plu4380	plu4758	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.548
plu0352	fusA	plu0352	plu0431	Unnamed protein product; Hypothetical gene.	Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]	0.540
plu0352	lysC	plu0352	plu4380	Unnamed protein product; Hypothetical gene.	Lysine-sensitive aspartokinase III (aspartate kinase III); Belongs to the aspartokinase family.	0.540
plu0352	plu0353	plu0352	plu0353	Unnamed protein product; Hypothetical gene.	Unnamed protein product; Some similarities with putative Rhs protein.	0.912
plu0352	plu0354	plu0352	plu0354	Unnamed protein product; Hypothetical gene.	Unnamed protein product; Similar to unknown protein.	0.897
plu0352	plu0355	plu0352	plu0355	Unnamed protein product; Hypothetical gene.	Unnamed protein product; Similar to VrgG protein.	0.840
plu0352	rpmE	plu0352	plu0036	Unnamed protein product; Hypothetical gene.	50S ribosomal protein L31.	0.539
plu0352	rpmE-2	plu0352	plu4758	Unnamed protein product; Hypothetical gene.	50S ribosomal protein L31; Binds the 23S rRNA.	0.539

page 1 of 3

Server load: medium (58%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About