Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0382Unnamed protein product; Some similarities with unknown protein. (358 aa)    
Predicted Functional Partners:
plu4904
Unnamed protein product; Similar to ATP-dependent DNA helicase.
  
  
 
0.927
recG
ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
plu0383
Unnamed protein product; Similar to unknown protein.
 
     0.899
plu1935
N6_N4_Mtase domain-containing protein; Unnamed protein product; Weakly similar to predicted DNA methylase containing a Zn-ribbon module.
 
     0.612
plu0384
Unnamed protein product; Similar to unknown protein Z3269 of Escherichia coli O157:H7.
       0.566
plu0253
Fido domain-containing protein; Unnamed protein product; Similar to unknown protein.
 
     0.532
plu0863
DUF4065 domain-containing protein; Unnamed protein product; Some similarities with unknown protein of Photorhabdus.
  
     0.481
plu3930
Fido domain-containing protein; Unnamed protein product; Some similarities with Huntington interacting protein.
 
     0.438
ISPlu10K
Transposase, IS630 family.
  
    0.405
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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