STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0421Unnamed protein product; Highly similar to unknown protein. Putative secreted protein. (67 aa)    
Predicted Functional Partners:
plu2556
Unnamed protein product; Highly similar to unknown protein YeaC of Escherichia coli.
  
     0.731
plu3186
Unnamed protein product; Highly similar to unknown protein YfcL of Escherichia coli.
  
     0.697
slyD
Peptidyl-prolyl cis-trans isomerase, FkbP-type (rotamase).
  
    0.611
sdhC
Succinate dehydrogenase cytochrome b-556 subunit.
  
     0.610
plu2871
UPF0352 protein plu2871; Unnamed protein product; Highly similar to unknown protein YejL of Escherichia coli; Belongs to the UPF0352 family.
  
     0.608
syd
Syd protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.605
nlpB
Lipoprotein-34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.523
plu3094
UPF0208 membrane protein plu3094; Unnamed protein product; Similar to unknown protein YfbV of Escherichia coli.
  
     0.516
seqA
SeqA protein, negative modulator of initiation of replication; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.494
envZ
Osmolarity sensor protein.
  
     0.490
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.