STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0425Unnamed protein product; Highly similar to unknown protein YheO of Escherichia coli. (244 aa)    
Predicted Functional Partners:
tusC
Protein TusC; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.
 
    0.829
tusD
Sulfurtransferase TusD; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE.
  
    0.814
tusB
Protein TusB; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions.
     
 0.778
plu4737
Unnamed protein product; Similar to unknown protein YijD of Escherichia coli.
  
     0.703
plu2097
Unnamed protein product; Similar to unknown protein YecM of Escherichia coli.
  
     0.685
plu4498
Unnamed protein product; Highly similar to unknown protein YjgF of Escherichia coli.
 
  
 0.540
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
    0.531
sdaC
Serine transporter SdaC protein.
 
     0.472
plu1264
HNS domain-containing protein; Unnamed protein product; Similar to the DNA-binding protein H-NS (protein H1 or B1).
  
     0.469
plu1385
BOF domain-containing protein; Unnamed protein product; Similar to putative exported protein YgiW of Escherichia coli.
  
     0.459
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.