Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0461Sulfatase domain-containing protein; Unnamed protein product; Some similarities with putative integral membrane protein. (671 aa)    
Predicted Functional Partners:
plu4177
Pyosin/cloacin_T_dom domain-containing protein; Unnamed protein product; Some similarities with killer protein of pyocin S3 and highly similar to Photorhabdus luminescens unknown protein.
  
     0.753
plu0340
MvaI_BcnI domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.751
plu2313
Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.
  
     0.683
plu4425
Probable membrane transporter protein; Unnamed protein product; Similar to unknown protein.
 
     0.603
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
   
 0.601
plu2891
Unnamed protein product; Similar to unknown bacteriophage protein.
  
     0.565
ccdA
CcdA protein.
  
     0.503
plu1894
HNHc domain-containing protein; Unnamed protein product; Similar to pyocin S2 and S1.
  
     0.475
plu1967
OMP_b-brl domain-containing protein; Unnamed protein product; Similar to putative PagC-like membrane protein (virulence-related membrane protein) of Escherichia coli O157:H7.
  
     0.470
plu2879
Unnamed protein product; Similar to putative bacteriophage protein.
  
     0.435
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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