Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
plu0543Phage_integrase domain-containing protein; Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family. (376 aa)    
Predicted Functional Partners:
plu0544
ZnF_CHCC domain-containing protein; Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with DNA primase.
 
     0.862
plu0419
Recombinase, Type 1 fimbriae regulatory protein.
  
     0.774
mrfI
MrfI protein.
  
     0.774
plu0260
Phage_integrase domain-containing protein; Unnamed protein product; Similar to fimbriae regulatory recombinase protein FimB of Escherichia coli, involved in phase variation; regulator for FimA in Escherichia coli.
  
     0.773
plu4792
Phage_integrase domain-containing protein; Unnamed protein product; Highly similar to the C-terminal region of Int protein.
  
   
 0.627
plu0545
HTH cro/C1-type domain-containing protein; Unnamed protein product; Similar to unknown protein of Bacteriophage.
       0.512
plu1166
Unnamed protein product; Similar to XerC integrase; Belongs to the 'phage' integrase family.
  
     0.491
plu1144
Unnamed protein product.
  
     0.461
plu4790
Phage_integrase domain-containing protein; Unnamed protein product; Similar to bacteriophage integrase.
  
   
 0.428
plu1029
Unnamed protein product; Some similarities with integrase; Belongs to the 'phage' integrase family.
  
     0.425
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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