Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ppdBPrepilin peptidase dependent protein B precursor. (195 aa)    
Predicted Functional Partners:
ppdA
Prepilin peptidase dependent protein A precursor.
 
 
 0.938
pilV
PilV protein; Similar to type IV prepilin PilV protein.
  
 
 0.675
plu1734
Shufflon_N domain-containing protein; Unnamed protein product; Some similarities with PilV.
  
 
 0.675
plu3067
Unnamed protein product; Similar to unknown protein YfaZ precursor of Escherichia coli.
  
     0.624
plu2232
UPF0482 protein plu2232; Unnamed protein product; Similar to unknown protein YnfB precursor of Escherichia coli; Belongs to the UPF0482 family.
  
     0.621
plu3312
Unnamed protein product; Similar to putative alpha helix protein YfhG of Escherichia coli.
  
     0.569
flgM
Negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM.
  
     0.550
plu2133
Unnamed protein product; Similar to hypothetical lipoprotein YeaY precursor of Escherichia coli.
  
     0.542
plu1818
Unnamed protein product; Similar to unknown protein YceP of Escherichia coli.
  
     0.541
ppdD
Prepilin peptidase dependent protein D precursor.
  
   
 0.539
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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