plu0643 protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

plu0643

P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein. (2123 aa)

Predicted Functional Partners:

plu1900

0.928

plu2057

0.928

plu2891

0.928

plu3036

0.928

plu3560

0.928

plu0634

0.794

plu2313

0.750

plu0082

0.746

rtxB

0.737

plu3127

0.737

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
plu0082	plu0643	plu0082	plu0643	Unnamed protein product; Similar to unknown protein.	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	0.746
plu0082	plu2313	plu0082	plu2313	Unnamed protein product; Similar to unknown protein.	Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.	0.499
plu0634	plu0643	plu0634	plu0643	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	0.794
plu0634	plu2313	plu0634	plu2313	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.	0.460
plu0634	plu3127	plu0634	plu3127	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	Unnamed protein product; Similar to toxin secretion transporter.	0.405
plu0634	rtxB	plu0634	plu1333	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	RTX toxin ABC transporter (IM-ABC) protein RtxB.	0.401
plu0643	plu0082	plu0643	plu0082	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to unknown protein.	0.746
plu0643	plu0634	plu0643	plu0634	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	0.794
plu0643	plu1900	plu0643	plu1900	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to unknown protein of Photorhabdus.	0.928
plu0643	plu2057	plu0643	plu2057	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Some similarities with putative adhesin, invasin and intimin.	0.928
plu0643	plu2313	plu0643	plu2313	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.	0.750
plu0643	plu2891	plu0643	plu2891	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to unknown bacteriophage protein.	0.928
plu0643	plu3036	plu0643	plu3036	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to unknown bacteriophage protein.	0.928
plu0643	plu3127	plu0643	plu3127	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Similar to toxin secretion transporter.	0.737
plu0643	plu3560	plu0643	plu3560	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	Unnamed protein product; Highly similar to unknown protein of Photorhabdus and some similarities with unknown glycine-rich protein.	0.928
plu0643	rtxB	plu0643	plu1333	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	RTX toxin ABC transporter (IM-ABC) protein RtxB.	0.737
plu1900	plu0643	plu1900	plu0643	Unnamed protein product; Similar to unknown protein of Photorhabdus.	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	0.928
plu2057	plu0643	plu2057	plu0643	Unnamed protein product; Some similarities with putative adhesin, invasin and intimin.	P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.	0.928
plu2313	plu0082	plu2313	plu0082	Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.	Unnamed protein product; Similar to unknown protein.	0.499
plu2313	plu0634	plu2313	plu0634	Uncharacterized protein; Truncated gene. Some similarities with beta-lactamase of Yersinia enterocolitica.	Unnamed protein product; Similar to toxin secretion ATP-binding protein.	0.460

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About