amiC protein (Photorhabdus laumondii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

amiC

N-acetylmuramoyl-L-alanine amidase precursor. (414 aa)

Predicted Functional Partners:

amiB

0.922

lolA

0.547

argA

0.501

plu4841

0.453

ftsX

0.450

nlpD

0.432

Your Current Organism:

Photorhabdus laumondii

NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
amiB	amiC	plu4584	plu0645	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	N-acetylmuramoyl-L-alanine amidase precursor.	0.922
amiB	ftsX	plu4584	plu4102	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.483
amiB	lolA	plu4584	plu1602	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	Outer-membrane lipoproteins carrier protein precursor (P20); Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.547
amiB	nlpD	plu4584	plu0718	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	Lipoprotein NlpD precursor.	0.529
amiB	plu4841	plu4584	plu4841	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	Peptidase_M23 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YibP of Escherichia coli.	0.561
amiC	amiB	plu0645	plu4584	N-acetylmuramoyl-L-alanine amidase precursor.	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	0.922
amiC	argA	plu0645	plu0644	N-acetylmuramoyl-L-alanine amidase precursor.	Amino-acid acetyltransferase (N-acetylglutamate synthase); Belongs to the acetyltransferase family. ArgA subfamily.	0.501
amiC	ftsX	plu0645	plu4102	N-acetylmuramoyl-L-alanine amidase precursor.	Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.450
amiC	lolA	plu0645	plu1602	N-acetylmuramoyl-L-alanine amidase precursor.	Outer-membrane lipoproteins carrier protein precursor (P20); Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.547
amiC	nlpD	plu0645	plu0718	N-acetylmuramoyl-L-alanine amidase precursor.	Lipoprotein NlpD precursor.	0.432
amiC	plu4841	plu0645	plu4841	N-acetylmuramoyl-L-alanine amidase precursor.	Peptidase_M23 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YibP of Escherichia coli.	0.453
argA	amiC	plu0644	plu0645	Amino-acid acetyltransferase (N-acetylglutamate synthase); Belongs to the acetyltransferase family. ArgA subfamily.	N-acetylmuramoyl-L-alanine amidase precursor.	0.501
ftsX	amiB	plu4102	plu4584	Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	0.483
ftsX	amiC	plu4102	plu0645	Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	N-acetylmuramoyl-L-alanine amidase precursor.	0.450
ftsX	plu4841	plu4102	plu4841	Cell division protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	Peptidase_M23 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YibP of Escherichia coli.	0.939
lolA	amiB	plu1602	plu4584	Outer-membrane lipoproteins carrier protein precursor (P20); Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	0.547
lolA	amiC	plu1602	plu0645	Outer-membrane lipoproteins carrier protein precursor (P20); Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	N-acetylmuramoyl-L-alanine amidase precursor.	0.547
nlpD	amiB	plu0718	plu4584	Lipoprotein NlpD precursor.	N-acetylmuramoyl-L-alanine amidase AmiB precursor.	0.529
nlpD	amiC	plu0718	plu0645	Lipoprotein NlpD precursor.	N-acetylmuramoyl-L-alanine amidase precursor.	0.432
nlpD	plu4841	plu0718	plu4841	Lipoprotein NlpD precursor.	Peptidase_M23 domain-containing protein; Unnamed protein product; Similar to putative membrane protein YibP of Escherichia coli.	0.417

page 1 of 2

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About