STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0650SufE domain-containing protein; Unnamed protein product; Similar to hypothetical protein YgdK of Escherichia coli. (151 aa)    
Predicted Functional Partners:
csdA
Cysteine sulfinate desulfinase (CSD).
 
 0.960
sufS
Selenocysteine lyase; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
 
 0.855
sufB
SufB protein.
 
 
 0.749
sufC
Probable ATP-dependent transporter SufC.
 
 
 0.685
sufD
SufD protein.
 
 
 0.663
plu0448
Aminotran_5 domain-containing protein; Unnamed protein product; Similar to Nifs family aminotransferase.
 
 
 0.630
fruA
PTS system, fructose-specific IIBC component.
      
 0.487
plu1435
Aminotran_5 domain-containing protein; Unnamed protein product; Some similarities with aminotransferase. Putative transmembrane protein.
  
 
 0.429
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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