STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prtAAlkaline metalloprotease precursor PrtA; Belongs to the peptidase M10B family. (480 aa)    
Predicted Functional Partners:
inh
Proteinase inhibitor Inh precursor; Inhibitor of the alkaline protease.
  
 
 0.924
prtB
ATP-binding protein PrtB.
 
 
 0.889
prtC
Membrane Fusion Protein PrtC.
 
  
 0.857
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
      
 0.641
plu0643
P/Homo B domain-containing protein; Unnamed protein product; The central region presents some similarities with proprotein convertase. Putative transmembrane protein.
 
  
 0.635
prtD
Outer membrane protein PrtD.
 
  
 0.635
phlB
PhlA hemolysin secretion/activation protein PhlB.
  
  
 0.611
ecfE
Protease EcfE.
      
 0.596
plu2947
Integrase_SAM-like_N domain-containing protein; Unnamed protein product; Similar to bacteriophage integrase; Belongs to the 'phage' integrase family.
  
   
 0.573
tcdB2
Insecticidal toxin complex protein TcdB2.
  
    0.559
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.