STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prtCMembrane Fusion Protein PrtC. (444 aa)    
Predicted Functional Partners:
prtB
ATP-binding protein PrtB.
  
 0.932
prtA
Alkaline metalloprotease precursor PrtA; Belongs to the peptidase M10B family.
 
  
 0.853
plu3125
Unnamed protein product; Similar to toxin secretion transporter.
 
 0.784
plu3127
Unnamed protein product; Similar to toxin secretion transporter.
 
 0.782
rtxB
RTX toxin ABC transporter (IM-ABC) protein RtxB.
 
 0.777
plu0634
Unnamed protein product; Similar to toxin secretion ATP-binding protein.
 
 0.774
plu1331
Unnamed protein product; Similar to unknown protein VC1446 of Vibrio cholerae, probable RTX toxin ABC transporter (IM-ABC) protein.
 
 0.773
prtD
Outer membrane protein PrtD.
 
 
 0.742
macB
Macrolide-specific ABC-type efflux carrier protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.594
inh
Proteinase inhibitor Inh precursor; Inhibitor of the alkaline protease.
  
  
 0.583
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.