Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rofRof protein. (88 aa)    
Predicted Functional Partners:
lpoB
Penicillin-binding protein activator LpoB; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b).
  
   
 0.801
asmA
Protein AsmA precursor.
 
     0.776
plu2146
DctA-YdbH domain-containing protein; Unnamed protein product; Similar to membrane protein YdbH of Escherichia coli.
  
     0.770
plu2361
Unnamed protein product; Similar to probable membrane protein YdgA of Escherichia coli.
  
     0.763
smp
Protein Smp precursor.
  
     0.759
plu1173
Unnamed protein product; Highly similar to unknown protein YggN of Escherichia coli.
  
     0.759
plu1386
Unnamed protein product; Similar to putative lipoprotein precursor YfeY protein of Escherichia coli.
  
     0.756
plu0844
Unnamed protein product; Similar to unknown protein YacC of Escherichia coli.
  
     0.754
helD
DNA helicase IV.
  
     0.754
rcsD
Phosphotransferase RcsD; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
  
     0.743
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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