Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0707Unnamed protein product; Highly similar to unknown protein. (91 aa)    
Predicted Functional Partners:
plu0706
Unnamed protein product; Highly similar to unknown protein.
 
   
 0.949
plu0807
Unnamed protein product; Weakly similar to hypothetical protein.
 
   
 0.787
plu4791
Unnamed protein product; Some similarities with HicB-like protein.
 
   
 0.773
plu2758
Unnamed protein product; Similar to the HicB protein of Haemophilus influenzae.
 
   
 0.771
plu1932
Unnamed protein product; Similar to unknown protein.
  
   
 0.585
plu2339
Uncharacterized protein.
  
     0.507
plu3933
Unnamed protein product; Similar to unknown protein.
  
     0.482
plu0253
Fido domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.458
plu4118
Unnamed protein product; Similar to unknown protein.
  
     0.448
cysG
Sirohaem synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
       0.437
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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