STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0735Unnamed protein product; Similar to unknown protein. (371 aa)    
Predicted Functional Partners:
plu0159
FA_desaturase domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
  
     0.672
plu1927
DUF4123 domain-containing protein; Unnamed protein product; Unknown protein.
  
     0.554
plu2351
NAD(P)-bd_dom domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
     0.516
plu0250
Methyltransf_25 domain-containing protein; Unnamed protein product; Similar to TRP-1 protein encoded by the toxA gene of Burkholderia glumae, methyltransferase involved in toxoflavin biosynthesis.
  
     0.465
plu2321
Unnamed protein product; Similar to protein HMWP1 of Yersinia enterocolitica.
 
  
 0.459
plu1212
Carrier domain-containing protein; Unnamed protein product; Some similarities with polyketide synthase PksC and mycosubtilin synthetase chain MycA. Putative transmembrane protein.
  
   
 0.455
plu1762
Unnamed protein product; Similar to probable glycosyltransferase.
  
     0.454
plu2816
Unnamed protein product; Similar to pyoverdine biosynthesis protein PvcA of Pseudomonas aeruginosa.
  
     0.454
plu3001
Uncharacterized protein; Truncated gene. Some similarities with unknown protein YnfI precursor of Escherichia coli.
  
     0.452
plu3923
Condensation domain-containing protein; Unnamed protein product; Weakly similar to synthetases (pyoverdine synthetase B, actinomycin synthetase II AcmB, mycosubtilin synthetase chain MycB...).
  
   
 0.446
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.