Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0740Unnamed protein product; Some similarities with probable transmembrane sensor. (337 aa)    
Predicted Functional Partners:
plu0741
Unnamed protein product; Similar to probable sigma-70 factor, ECF subfamily.
 
 
 0.974
fecR
Protein fecR.
  
  
 
0.916
plu1235
Unnamed protein product; Similar to sigma-70 factor, ECF subfamily.
 
 
 0.893
fecI
RNA polymerase sigma factor; Truncated transposase, IS30 family (ISPlu1-p); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.893
plu0739
STN domain-containing protein; Unnamed protein product; Similar to Outer Membrane Receptor (OMR).
 
  
 0.892
fhuE
FhuE receptor precursor (Outer-membrane receptor for ferric iron uptake).
 
 
 0.891
fecA
Iron(III) dicitrate outer membrane transporter precursor protein FecA.
 
 
 0.797
plu3513
Unnamed protein product; Some similarities with heme receptor HasR.
 
  
 0.688
plu2316
Unnamed protein product; Similar to the pesticin receptor precursor FuyA (IRPC).
 
  
 0.635
plu3514
TPR_REGION domain-containing protein; Unnamed protein product; Some similarities with unknown protein.
 
     0.540
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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