Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0766Unnamed protein product; Hypothetical gene. (67 aa)    
Predicted Functional Partners:
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.728
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
  
  
 0.726
sucA
2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase).
    
 
 0.693
sctU
Type III secretion component protein SctU; Highly similar to Yop proteins translocation protein U.
  
  
 0.675
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
  
 0.629
sctT
Type III secretion component protein SctT; Similar to Yop proteins translocation protein T.
  
  
 0.594
sctR
Type III secretion component protein SctR; Similar to Yop proteins translocation protein R.
  
  
 0.585
sctS
Type III secretion component protein SctS; Similar to Yop proteins translocation protein S.
  
  
 0.577
plu0082
Unnamed protein product; Similar to unknown protein.
   
    0.576
sctO
Type III secretion component protein SctO; Similar to Yop proteins translocation protein O.
   
  
 0.552
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.