STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0766Unnamed protein product; Hypothetical gene. (67 aa)    
Predicted Functional Partners:
sucA
2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase).
    
 
 0.727
sctV
Type III secretion protein SctV; Highly similar to low calcium response locus protein D LcrD and PcrD.
  
  
 0.725
sctJ
Type III secretion component protein SctJ; Similar to Yop proteins translocation protein J.
  
  
 0.717
sctU
Type III secretion component protein SctU; Highly similar to Yop proteins translocation protein U.
  
  
 0.665
sctT
Type III secretion component protein SctT; Similar to Yop proteins translocation protein T.
  
  
 0.640
plu3756
Unnamed protein product; Similar to translocator proteins YopB and PepB.
  
  
 0.639
sctR
Type III secretion component protein SctR; Similar to Yop proteins translocation protein R.
  
  
 0.613
sctS
Type III secretion component protein SctS; Similar to Yop proteins translocation protein S.
  
  
 0.585
gltB
Glutamate synthase [NADPH] large chain precursor (glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain).
    
   0.584
plu0082
Unnamed protein product; Similar to unknown protein.
   
    0.577
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.