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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaATryptophanase (L-tryptophan indole-lyase) (TNase); Belongs to the beta-eliminating lyase family. (466 aa)    
Predicted Functional Partners:
trpA
Tryptophan synthase alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.917
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
     
 0.910
plu4269
Unnamed protein product; Similar to amino acid decarboxylase.
     
 0.902
plu1434
Unnamed protein product; Some similarities with putative oxidoreductase.
     
  0.900
mtr
Tryptophan-specific transport protein (Tryptophan permease).
  
  
 0.813
mrfA
MrfA protein; Highly similar to major structural subunit MrpA of Proteus mirabilis.
      
 0.526
tccA3
Insecticidal toxin complex protein TccA3.
      
 0.526
tccB3
Insecticidal toxin complex protein TccB3.
      
 0.526
plu0884
Pyosin/cloacin_T_dom domain-containing protein; Unnamed protein product; Some similarities with killer protein of pyocin S3 and highly similar to Photorhabdus luminescens unknown protein.
      
 0.526
plu0886
Unnamed protein product; Similar to pyocin S3 immunity protein.
      
 0.526
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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