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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrTryptophan-specific transport protein (Tryptophan permease). (414 aa)    
Predicted Functional Partners:
tnaA
Tryptophanase (L-tryptophan indole-lyase) (TNase); Belongs to the beta-eliminating lyase family.
  
  
 0.813
menC
O-succinylbenzoate-CoA synthase (OSB synthase) (4-(2'-carboxyphenyl)-4-oxybutyric acid synthase); Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.596
dnaQ
DNA polymerase III epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
    
 
 0.534
plu1385
BOF domain-containing protein; Unnamed protein product; Similar to putative exported protein YgiW of Escherichia coli.
  
     0.529
mrfA
MrfA protein; Highly similar to major structural subunit MrpA of Proteus mirabilis.
      
 0.526
tccA3
Insecticidal toxin complex protein TccA3.
      
 0.526
tccB3
Insecticidal toxin complex protein TccB3.
      
 0.526
plu0884
Pyosin/cloacin_T_dom domain-containing protein; Unnamed protein product; Some similarities with killer protein of pyocin S3 and highly similar to Photorhabdus luminescens unknown protein.
      
 0.526
plu0886
Unnamed protein product; Similar to pyocin S3 immunity protein.
      
 0.526
plu0892
Unnamed protein product; Similar to colicin / pyocin immunity protein.
      
 0.526
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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