Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plu0801Unnamed protein product; Similar to unknown protein. (403 aa)    
Predicted Functional Partners:
plu1011
PEP_hydrolase domain-containing protein; Unnamed protein product; Similar to unknown protein.
  
 0.990
ISPlu16B
Transposase, IS630 family.
   
  
 0.546
plu0838
PTS EIIA type-4 domain-containing protein; Unnamed protein product; Similar to putative PTS system IIA component YadI of Escherichia coli.
      
 0.539
gatY
Tagatose-bisphosphate aldolase GatY.
      
 0.539
plu1125
Unnamed protein product; Similar to integrase/recombinase; Belongs to the 'phage' integrase family.
      
 0.539
plu1579
acidPPc domain-containing protein; Unnamed protein product; Similar to probable bacitracin transport permease YbjG of Escherichia coli.
      
 0.539
plu1672
Unnamed protein product; Similar to unknown protein of Photorhabdus.
      
 0.539
plu1950
Unnamed protein product; Similar to unknown protein of Photorhabdus.
      
 0.539
plu2652
Unnamed protein product; Hypothetical protein.
      
 0.539
plu2790
Unnamed protein product; Similar to probable probable N-acetylmuramoyl-L-alanine amidase YbjR precursor of Escherichia coli.
      
 0.539
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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