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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plu0802HTH tetR-type domain-containing protein; Unnamed protein product; Similar to putative TetR-family regulatory protein. (208 aa)    
Predicted Functional Partners:
plu2916
Prim_Zn_Ribbon domain-containing protein; Unnamed protein product; Some similarities with alpha replication protein of prophage.
  
     0.757
plu3647
Unnamed protein product; Similar to unknown protein.
  
     0.726
plu1542
MFS_4 domain-containing protein; Unnamed protein product; Similar to putative transport protein YjiJ of Escherichia coli.
  
     0.705
plu2917
Unnamed protein product; Similar to bacteriophage protein, putative DNA or RNA helicases.
  
     0.673
priC
Primosomal replication factor N''.
  
     0.663
ppdA
Prepilin peptidase dependent protein A precursor.
  
     0.649
mrfG
MrfG protein; Highly similar to fimbrial protein MrpG of Proteus mirabilis, a putative minor subunit of the MR/P fimbria, functions as an adhesin responsible for hemagglutination.
  
     0.593
plu2687
CopD domain-containing protein; Unnamed protein product; Similar to probable membrane protein YebZ of Escherichia coli.
  
     0.593
plu4899
Sulfatase domain-containing protein; Unnamed protein product; Similar to putative membrane protein.
  
     0.592
secM
Secretion monitor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
   
 0.552
Your Current Organism:
Photorhabdus laumondii
NCBI taxonomy Id: 243265
Other names: P. laumondii subsp. laumondii TTO1, Photorhabdus laumondii subsp. laumondii TTO1, Photorhabdus luminescens subsp. laumondii TTO1
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